Herman, my son Dennis may have it right, you can see by his explanation how complicated the whole system we run is. I still think I remember being off by a tooth though, but his memory and understanding of what I did wrong is probably better than mine.
Yes, in most cases you can rotate the distributor to compensate for being off by a tooth, but in our case the aftermarket intake manifold prevented the distributor from being rotated enough to make up for being off, there was physical interference between the distributor and intake manifold. In fact, we have to use a Chevy distributor cap with an adapter because the Ford cap is too large to fit with this intake.
So if I understand what happened in our case was, the distributor was installed wrong, we rotated the distributor as far as it would go to compensate and made adjustments in the computer to further try to compensate, and somewhere in there because the distributor was not aligned properly the plug wires were off by one.
Here's a shot of the intake on the Cobra:
Anyway, now you know why they dont let me work on the Swift anymore (that and the time I almost killed my son when the throttle stuck open in the Swift because of the way I designed our carb linkage). Not a joke. I dropped the car off at Jim Little's shop the next day and havent really worked on it since. Now they just use me to get lunch at the track. Most of the time I get that wrong too! Sorry Jim, yes Jim, I'll remember the tomatoes next time Jim.